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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: HUVEC
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX048523
HUVEC-02805 ChIP-seq H3K9me3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
sample_name
WadaLab-IHEC40
age
new born
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
Human Umbilical Vein Endothelial Cells
collection_date
2013-09-13
donor_id
JTK044
ethnicity
Caucasian
health_state
missing
ihec ref
JTK044
label
IHEC40
lot number
2805
sample_type
Primary Cell
sex
male
tissue_type
the endothelium of blood vessels
Sequenced DNA Library
library_name
WadaLab-IHEC40-E2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
46437535
Reads aligned (%)
98.5
Duplicates removed (%)
5.6
Number of peaks
2231 (qval < 1E-05)
hg19
Number of total reads
46437535
Reads aligned (%)
97.5
Duplicates removed (%)
8.5
Number of peaks
1684 (qval < 1E-05)
Base call quality data from
DBCLS SRA