Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC40
age
new born
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
Human Umbilical Vein Endothelial Cells
collection_date
2013-09-13
donor_id
JTK044
ethnicity
Caucasian
health_state
missing
ihec ref
JTK044
label
IHEC40
lot number
2805
sample_type
Primary Cell
sex
male
tissue_type
the endothelium of blood vessels

Sequenced DNA Library

library_name
WadaLab-IHEC40-D2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
52008281
Reads aligned (%)
96.6
Duplicates removed (%)
8.4
Number of peaks
68839 (qval < 1E-05)

hg19

Number of total reads
52008281
Reads aligned (%)
95.8
Duplicates removed (%)
10.1
Number of peaks
68633 (qval < 1E-05)

Base call quality data from DBCLS SRA