Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC39
age
new born
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
Human Umbilical Vein Endothelial Cells
collection_date
2013-06-01
donor_id
JTK043
ethnicity
Arabic
health_state
missing
ihec ref
JTK043
label
IHEC39
lot number
3331
sample_type
Primary Cell
sex
male
tissue_type
the endothelium of blood vessels

Sequenced DNA Library

library_name
WadaLab-IHEC39-E2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
48447982
Reads aligned (%)
98.5
Duplicates removed (%)
5.5
Number of peaks
1974 (qval < 1E-05)

hg19

Number of total reads
48447982
Reads aligned (%)
97.5
Duplicates removed (%)
8.0
Number of peaks
1673 (qval < 1E-05)

Base call quality data from DBCLS SRA