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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H2A.Z
wikigenes
PDBj
CellType: T cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX044434
NextSeq 500 sequencing of SAMD00043227
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H2A.Z
Cell type
Cell type Class
Blood
Cell type
T cells
NA
NA
Attributes by original data submitter
Sample
sample_name
011_ED_ChIP_H2A.Z_2
collection_date
2015-03-18
cell_line
ED cells
cell_type
T cell
replicate
biological replicate 2
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
46397691
Reads aligned (%)
88.6
Duplicates removed (%)
19.8
Number of peaks
2880 (qval < 1E-05)
hg19
Number of total reads
46397691
Reads aligned (%)
87.8
Duplicates removed (%)
21.6
Number of peaks
2659 (qval < 1E-05)
Base call quality data from
DBCLS SRA