DRX044428
NextSeq 500 sequencing of SAMD00043221

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

sample_name
006_ED_ChIP_H3K4me3_2
collection_date
2015-03-18
cell_line
ED cells
cell_type
T cell
replicate
biological replicate 2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
63100918
Reads aligned (%)
94.5
Duplicates removed (%)
35.6
Number of peaks
25621 (qval < 1E-05)

hg19

Number of total reads
63100918
Reads aligned (%)
94.2
Duplicates removed (%)
36.1
Number of peaks
25413 (qval < 1E-05)

Base call quality data from DBCLS SRA