Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

sample_name
005_ED_ChIP_H3K4me3_1
collection_date
2015-03-10
cell_line
ED cells
cell_type
T cell
replicate
biological replicate 1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
54167716
Reads aligned (%)
95.9
Duplicates removed (%)
31.1
Number of peaks
29912 (qval < 1E-05)

hg19

Number of total reads
54167716
Reads aligned (%)
95.7
Duplicates removed (%)
31.4
Number of peaks
29787 (qval < 1E-05)

Base call quality data from DBCLS SRA