Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

sample_name
003_ED_ChIP_CTCF_1
collection_date
2015-03-10
cell_line
ED cells
cell_type
T cell
replicate
biological replicate 1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
47350725
Reads aligned (%)
70.7
Duplicates removed (%)
14.8
Number of peaks
32759 (qval < 1E-05)

hg38

Number of total reads
47350725
Reads aligned (%)
73.0
Duplicates removed (%)
12.9
Number of peaks
33514 (qval < 1E-05)

Base call quality data from DBCLS SRA