DRX044424
NextSeq 500 sequencing of SAMD00043217

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

sample_name
002_ED_ChIP_Input_2
collection_date
2015-03-18
cell_line
ED cells
cell_type
T cell
replicate
biological replicate 2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
73444810
Reads aligned (%)
95.1
Duplicates removed (%)
5.8
Number of peaks
3354 (qval < 1E-05)

hg19

Number of total reads
73444810
Reads aligned (%)
94.0
Duplicates removed (%)
8.3
Number of peaks
1795 (qval < 1E-05)

Base call quality data from DBCLS SRA