DRX044423
NextSeq 500 sequencing of SAMD00043216

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

sample_name
001_ED_ChIP_Input_1
collection_date
2015-03-10
cell_line
ED cells
cell_type
T cell
replicate
biological replicate 1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
104780896
Reads aligned (%)
95.1
Duplicates removed (%)
5.9
Number of peaks
3489 (qval < 1E-05)

hg19

Number of total reads
104780896
Reads aligned (%)
93.9
Duplicates removed (%)
7.8
Number of peaks
1770 (qval < 1E-05)

Base call quality data from DBCLS SRA