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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K9me3
wikigenes
PDBj
CellType: NCI-H1819
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX015289
H1819 H3K9me3 [ChIPseq]
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K9me3
Cell type
Cell type Class
Lung
Cell type
NCI-H1819
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
sample_name
DRS014779
sample comment
H1819 lung adenocarcinoma cell lines; ChIPseq; anti-H3K9me3 (ab8898 GR111948-1, abcam);
Sequenced DNA Library
library_name
H1819 H3K9me3 [ChIPseq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
41681631
Reads aligned (%)
94.3
Duplicates removed (%)
13.6
Number of peaks
3506 (qval < 1E-05)
hg19
Number of total reads
41681631
Reads aligned (%)
90.9
Duplicates removed (%)
18.9
Number of peaks
12298 (qval < 1E-05)
Base call quality data from
DBCLS SRA