Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sample_name
DRS014276
age
newborn
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
catalog number
FC-0077
cause of death
Pneumonia
cell ontology
endothelial cell of umbilical vein
cell ontology uri
http://purl.obolibrary.org/obo/CL_0002618
cell type abbreviation
HUVEC
cell_type
Human Umbilical Vein Endothelial Cells
collection_date
2013-04-01
disease
pneumonia
disease ontology uri
http://purl.obolibrary.org/obo/DOID_552
donor_id
JTK006
ethnicity
Arabic
health_state
alive
ihec ref
JTK006
label
IHEC17
lot number
3223
sample_type
Primary Cell
sex
male
tissue_type
the endothelium of blood vessels
total cell count
525000
total cell count unit
cell per mili-liter
viability (tripan blue exclusion)
92%

Sequenced DNA Library

library_name
WadaLab-IHEC17-D1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
46260044
Reads aligned (%)
99.1
Duplicates removed (%)
4.5
Number of peaks
1483 (qval < 1E-05)

hg19

Number of total reads
46260044
Reads aligned (%)
98.3
Duplicates removed (%)
6.2
Number of peaks
1480 (qval < 1E-05)

Base call quality data from DBCLS SRA