Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

sample_name
DRS013101
sample comment
E14TG2a ESCs derived from 129/Ola were cultured in GMEM supplemented non-essential amino acids, 10% Knockout Serum Replacement, sodium pyruvate, L-glutamine, 2-mercaptoethanol, penicillin, streptomycin, and leukemia inhibitory factor without feeder cells.ChIP experiment with whole cell extract was performed as we have described previously. Samples destined for ChIP seq by Illumina HiSeq were prepared according to the manufacturer’s instructions.

Sequenced DNA Library

library_name
ChIP_mE14_WCE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
138605482
Reads aligned (%)
66.3
Duplicates removed (%)
49.9
Number of peaks
2010 (qval < 1E-05)

mm9

Number of total reads
138605482
Reads aligned (%)
66.1
Duplicates removed (%)
49.9
Number of peaks
1962 (qval < 1E-05)

Base call quality data from DBCLS SRA