Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
DRS013009
sample comment
ChIP seq library. MCF-7 cell line, CTCF IP

Sequenced DNA Library

library_name
MCF7 CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
60014738
Reads aligned (%)
78.6
Duplicates removed (%)
16.8
Number of peaks
14452 (qval < 1E-05)

hg38

Number of total reads
60014738
Reads aligned (%)
81.3
Duplicates removed (%)
14.9
Number of peaks
14150 (qval < 1E-05)

Base call quality data from DBCLS SRA