DRX013200
HeLa CTCF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
DRS012999
sample comment
ChIP seq library. HeLa cell line, CTCF IP

Sequenced DNA Library

library_name
HeLa CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32436216
Reads aligned (%)
93.9
Duplicates removed (%)
20.8
Number of peaks
25356 (qval < 1E-05)

hg19

Number of total reads
32436216
Reads aligned (%)
93.0
Duplicates removed (%)
22.7
Number of peaks
25222 (qval < 1E-05)

Base call quality data from DBCLS SRA