Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RAD21
wikigenes
PDBj
CellType: 293
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX013191
HEK293 Rad21
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RAD21
Cell type
Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
sample_name
DRS012990
sample comment
ChIP seq library. HEK293 cell line, Rad21 IP
Sequenced DNA Library
library_name
HEK293 Rad21
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
72204217
Reads aligned (%)
92.1
Duplicates removed (%)
11.5
Number of peaks
28795 (qval < 1E-05)
hg38
Number of total reads
72204217
Reads aligned (%)
93.0
Duplicates removed (%)
10.0
Number of peaks
29044 (qval < 1E-05)
Base call quality data from
DBCLS SRA