Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sample_name
DRS012989
sample comment
ChIP seq library. HEK293 cell line, CTCF IP

Sequenced DNA Library

library_name
HEK293 CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
36286816
Reads aligned (%)
80.2
Duplicates removed (%)
14.9
Number of peaks
42426 (qval < 1E-05)

hg38

Number of total reads
36286816
Reads aligned (%)
82.2
Duplicates removed (%)
13.5
Number of peaks
42674 (qval < 1E-05)

Base call quality data from DBCLS SRA