Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Digestive tract
Cell type
DLD-1
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
DRS012975
sample comment
ChIP seq library. DLD-1 cell line, PolII IP

Sequenced DNA Library

library_name
DLD1 PolII
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
28171615
Reads aligned (%)
63.1
Duplicates removed (%)
40.1
Number of peaks
8268 (qval < 1E-05)

hg19

Number of total reads
28171615
Reads aligned (%)
61.7
Duplicates removed (%)
40.9
Number of peaks
8335 (qval < 1E-05)

Base call quality data from DBCLS SRA