DRX005727
2 3 input (WT mouse)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic kidney
NA
NA

Attributes by original data submitter

Sample

sample_name
DRS005855
sample comment
The embryonic kidneys (at E16.5) of the wild type mouse were fixed for 30min, sonicated, and mixed with no antibody at 4C overnight, followed by precipitation by using Dynabeads M-280 conjugated with anti-rabbit IgG (Invitrogen).

Sequenced DNA Library

library_name
2_3_input (WT mouse)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
34365801
Reads aligned (%)
66.7
Duplicates removed (%)
7.3
Number of peaks
592 (qval < 1E-05)

mm9

Number of total reads
34365801
Reads aligned (%)
66.6
Duplicates removed (%)
7.4
Number of peaks
647 (qval < 1E-05)

Base call quality data from DBCLS SRA