Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic kidney
NA
NA

Attributes by original data submitter

Sample

sample_name
DRS005853
sample comment
The embryonic kidneys (at E16.5) of the wild type mouse were fixed for 30min, sonicated, and mixed with anti-rabbit IgG (Invitrogen) at 4C overnight, followed by precipitation by using Dynabeads M-280 conjugated with anti-rabbit IgG (Invitrogen).

Sequenced DNA Library

library_name
2_1_IgG (WT mouse )
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
28059365
Reads aligned (%)
62.5
Duplicates removed (%)
49.3
Number of peaks
458 (qval < 1E-05)

mm9

Number of total reads
28059365
Reads aligned (%)
62.4
Duplicates removed (%)
49.5
Number of peaks
525 (qval < 1E-05)

Base call quality data from DBCLS SRA