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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Embryonic kidney
ATCC
MeSH
RIKEN BRC
DRX005725
2 1 IgG (WT mouse )
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Embryo
Cell type
Embryonic kidney
NA
NA
Attributes by original data submitter
Sample
sample_name
DRS005853
sample comment
The embryonic kidneys (at E16.5) of the wild type mouse were fixed for 30min, sonicated, and mixed with anti-rabbit IgG (Invitrogen) at 4C overnight, followed by precipitation by using Dynabeads M-280 conjugated with anti-rabbit IgG (Invitrogen).
Sequenced DNA Library
library_name
2_1_IgG (WT mouse )
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
28059365
Reads aligned (%)
62.5
Duplicates removed (%)
49.3
Number of peaks
458 (qval < 1E-05)
mm9
Number of total reads
28059365
Reads aligned (%)
62.4
Duplicates removed (%)
49.5
Number of peaks
525 (qval < 1E-05)
Base call quality data from
DBCLS SRA