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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Chd4
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
DRX003662
ChIP-seq anti-Chd4 Th2 (3 days)
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Chd4
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
sample_name
DRS003822
sample comment
Mouse naïve CD4 T cells were stimulated under Th2 conditions for 3 days, then ChIP-seq for Chd4 was performed.
Sequenced DNA Library
library_name
ChIP-seq anti-Chd4 Th2 (3 days)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
12938836
Reads aligned (%)
75.8
Duplicates removed (%)
21.3
Number of peaks
559 (qval < 1E-05)
mm9
Number of total reads
12938836
Reads aligned (%)
75.6
Duplicates removed (%)
21.5
Number of peaks
648 (qval < 1E-05)
Base call quality data from
DBCLS SRA