DRX003661
ChIP-seq anti-Chd4 Th1 (3 days)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Chd4

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

sample_name
DRS003821
sample comment
Mouse naïve CD4 T cells were stimulated under Th1 conditions for 3 days, then ChIP-seq for Chd4 was performed.

Sequenced DNA Library

library_name
ChIP-seq anti-Chd4 Th1 (3 days)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
9347856
Reads aligned (%)
82.4
Duplicates removed (%)
18.3
Number of peaks
529 (qval < 1E-05)

mm9

Number of total reads
9347856
Reads aligned (%)
82.2
Duplicates removed (%)
18.6
Number of peaks
600 (qval < 1E-05)

Base call quality data from DBCLS SRA