Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Blood
Cell type
ML-2
Primary Tissue
Bone Marrow
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

sample_name
DRS001416
sample comment
Chromatin was obtained from the ML-2 human leukemia cell line, which expresses the MLL-AF6 fusion protein but not the wild type MLL protein. ChIP was performed using anti-H3K36me3 antibody and the precipitated DNAs were analyzed by deep sequencing.

Sequenced DNA Library

library_name
H3K36me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
54294776
Reads aligned (%)
83.7
Duplicates removed (%)
8.8
Number of peaks
1872 (qval < 1E-05)

hg19

Number of total reads
54294776
Reads aligned (%)
83.1
Duplicates removed (%)
9.5
Number of peaks
1827 (qval < 1E-05)

Base call quality data from DBCLS SRA