DRX000550
Genome-wide analysis of DJ-1-binding regions on human genes in SH-SY5Y cells treated with 6-OHDA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PARK7

Cell type

Cell type Class
Neural
Cell type
SH-SY5Y
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

sample_name
DRS000579
sample comment
Source of DNA used for sequencing was ChIP samples from SH-SY5Y cells using anti-DJ-1 antibody.
cell type
SH-SY5Y cells

Sequenced DNA Library

library_name
ChIP samples from SH-SY5Y cells treated with 6-OHDA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
none provided

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8039428
Reads aligned (%)
33.4
Duplicates removed (%)
42.5
Number of peaks
165 (qval < 1E-05)

hg19

Number of total reads
8039428
Reads aligned (%)
33.1
Duplicates removed (%)
43.5
Number of peaks
203 (qval < 1E-05)

Base call quality data from DBCLS SRA