DRX000549
Genome-wide analysis of DJ-1-binding regions on human genes in SH-SY5Y cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Park7

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

sample_name
DRS000579
sample comment
Source of DNA used for sequencing was ChIP samples from SH-SY5Y cells using anti-DJ-1 antibody.
cell type
SH-SY5Y cells

Sequenced DNA Library

library_name
ChIP samples from SH-SY5Y cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
none provided

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
9270532
Reads aligned (%)
1.9
Duplicates removed (%)
28.5
Number of peaks
1273 (qval < 1E-05)

mm9

Number of total reads
9270532
Reads aligned (%)
1.9
Duplicates removed (%)
28.6
Number of peaks
1284 (qval < 1E-05)

Base call quality data from DBCLS SRA