DRX000342
ES CHD2 ChIP-Seq 20100705 input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

sample_name
DRS000310
strain
129/Ola
sample comment
mouse EB5 cell lines medium condition:rLIF(+) 1% formaldehyde 5min. fixation input sample
cell_line
EB5

Sequenced DNA Library

library_name
illumina single library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
As described before.(Methods. 2009 Jul;48(3):240-8. Epub 2009 Mar 9.)

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16087694
Reads aligned (%)
97.7
Duplicates removed (%)
7.3
Number of peaks
220 (qval < 1E-05)

mm9

Number of total reads
16087694
Reads aligned (%)
97.6
Duplicates removed (%)
7.4
Number of peaks
221 (qval < 1E-05)

Base call quality data from DBCLS SRA